I'm more concerned about cooking in plastic containers, Melamine, Saran wrap, Styrofoam or with paper towels in the microwave than by the microwave cooking or reheating process by itself. I just use microwave-safe porcelain dishes, glass and Corning in the MW. Even if the microwaves probably don't affect the plastic dishes, I don't like the idea of heating food in them...
A few months ago, I ordered chicken breast strips from a local restaurant and the Styrofoam container had melted from the heat of the chicken strips (and BTW, I didn't reheat it and I don't think it has been in a MW oven either!). I didn't notice before I ate one of the strips and the taste was terrible! Then I looked at the container to see the Styrofoam had completely melted under that strip. I threw the rest of the lunch away and contacted the restaurant to tell them about it and I got a full refund but I still wasn't happy to know I ate some melted Styrofoam and I got that taste remaining for a while...
I'm wondering what hurts more, cooking food in a microwave oven and eating it or spending more energy by cooking/reheating with other means... I mean, if all the microwave ovens on this planet would suddenly be gone, what would be the positive/negative impacts?
If microwaves really affect what we eat, then I guess it would be better for each of us if we didn't personally use a MW oven and all others would (so less energy would be used by others!) but I don't know how better and we'd probably loose some precious time of our short lives by reheating with other ways! And then we could be concerned about watching our computer screen, having a cellphone, an internet wireless router or even by radio-transmission, not speaking about all kinds of air and water pollution that we already have to deal with...
Not that I really care that much about not "wasting" some energy. My newest vehicle is 20 years old, I have a few half-empty 1960s frost-proof fridges that are all plugged and I wash my clothes in non-Energy Star top loaders...